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The journal of microbiology v.35 no.2, 1997년, pp.79 - 86  

Phylogenetic study of trichaptum inferred from nuclear ribosomal DNA sequences

Ko, Kwon-Soo    (Research Center for Molecular Microbiology, Seoul National University   ); Hong, Soon-Gyu    (Research Center for Molecular Microbiology, Seoul National University   ); Jung, Hack-Sung    (Research Center for Molecular Microbiology, Seoul National University  );
  • 초록

    For the phylogenetic study of the genus Trichaptum, nuclear ribosomal DNA sequences from eight strains of four Trichaptium species were examined. Phylogenetic trees were constructed using molecular data on 18 rDNA and 5.8S rDNA and thei ITSs. Parsimony analyses of the Trichaptum species showed that T. biforme and T. laricinum made a monophyletic group respectively, suggesting that each species is phylogenetically independent. However, T. abietum represented a polyphyletic group and T. fusco-violaceum formed a polytomous group, suggesting that these species could be in the process of evolutionary differentiation. Examination of base substitutions of the 18S rRNA gene reveals that the C-T transition is most predominant and that there is a stronger transition bias between closely related organisms rather than between distantly related ones.

  • 주제어

    Base substitution .   ITS .   phylogeny .   rDNA .   Trichaptum.  

  • 참고문헌 (48)

    1. Accelerated evolution of a false-truffle from a mushroom ancestor , Bruns, T.E.;R. Fogel;T.J. White;J.D. Palmer , Nature / v.339,pp.140-142,
    2. Rate and mode differences between nuclear and mitochondrial small-subunit rRNA genes in mushrooms , Bruns, T.D.;T.M. Szaro , Mol. Biol. Evol. / v.9,pp.836-855,
    3. Relatedness of the ericoid endophytes Scytalidium vaccinii and Hymenoscyphus ericae inferred from analysis of ribosomal DNA , Egger, K.N.;L. Sigler , Mycologia / v.85,pp.219-230,
    4. Gilbertson, R.L.;L. Ryvarden , North American polypores / v.1,pp.1-433,
    5. Gilbertson, R.L.;L. Ryvarden , North American polypores / v.2,pp.437-885,
    6. Direct ligation of PCR products of cloning and sequencing , Haqqi, T.M. , Nucl. Acids Res. / v.20,pp.23,
    7. Phylogenetic analysis of five medically important Candida species as deduced on the basis of small ribosomal subunit RNA sequences , Hendriks, L.;A. Goris;Y.V. de Peer;J. Neers;M. Vancanneyt;K. Kersters;G.L. Hennebert;R. de Wachter , J. Gen. Microbiol. / v.137,pp.1223-1230,
    8. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products , Marchuk, D.;M. Drumm;A. Saulino;F.S. Collins , Nucl. Acids Res. / v.19,pp.1154,
    9. Phylogenetic divergence of the entomophthoralean fungi: evidence from nuclear 18S ribosomal RNA gene sequences , Nagahama, T.;J. Sato;M. Shimazu;J. Sugiyama , Mycologia / v.87,pp.203-209,
    10. 18S rRNA gene sequences and supraordinal classification of the Erysiphales , Saenz, G.S.;J.W. Taylor;A. Gargas , Mycologia / v.86,pp.212-216,
    11. Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence , Berbee, M.L.;J.W. Taylor , Mol. Biol. Evol. / v.9,pp.278-284,
    12. Assessment of Phialophora species based on ribosomal DNA internal transcribed spacers and morphology , Yan, Z.H.;S.O. Rogers;C.J.K. Wang , Mycologia / v.87,pp.72-83,
    13. Molecular evolution of the fungi: Human pathogens , Bowman, B.H.;J.W. Taylor;T.J. White , Mol. Biol. Evol. / v.9,pp.893-904,
    14. Tree-length distribution skewness: an indicator of phylogenetic information , Huelsenbeck, J.P. , Syst. Zool. / v.40,pp.257-270,
    15. Phylogenetic study of Trichaptum species based on the RFLP analysis of mitochondrial DNA , Kim, M.-S.;H.S. Jung , J. Microbiol. / v.34,pp.215-219,
    16. Ryvarden, L.;R.L. Gilbertson , European polypores / v.2,pp.394-743,
    17. Polymerase chain reaction (PCR) primers for amplifying and sequencing nuclear 18S rDNA from lichenized fungi , Gargas, A.;J.W. Taylor , Mycologia / v.84,pp.589-592,
    18. Phylogenetic relationships in Ganoderma inferred from the internal transcribed spacers and 25S ribosomal DNA sequences , Moncalvo, J.M.;H.H. Wang;R.S. Hseu , Mycologia / v.87,pp.223-238,
    19. The phylogeny of the tomato leaf mould fungus Cladosporium fulvum syn. Fulva by analysis of rDNA sequences , Curtis, M.D.;J. Gore;R.P. Oliver , Curr. Genet. / v.25,pp.318-322,
    20. Incompatibility factors in Polyporus abietinus, their numbers and distributions , Magasi, L.P. , Mem. N.Y. Bot. Gard. / v.28,pp.163-173,
    21. Ribosomal DNA internal transcribed spacers are highly divergent in the phytopathogenic ascomycete Fusarium sambucinum(Gibberella pulicaris) , O'Donnell, K.L. , Curr. Genet. / v.22,pp.213-220,
    22. Pairing incompatibility and other distinctions among Hirschioporus abietinus, H. fusco-violaceus, and H. laricinus , Macrae, R. , Can. J. Bot. / v.45,pp.1227-1398,
    23. Dating the evolutionary radiations of the true fungi , Berbee, M.L.;J.W. Taylor , Can. J. Bot. / v.71,pp.1114-1127,
    24. Mitochondrial DNA sequences of of primate: Tempo and mode of evolution , Brown, T.D.;E.M. Prager;A. Wang;A.C. Wilson , J. Mol. Evol. / v.18,pp.225-239,
    25. Gastrosuillus laricinus is a recent derivative of Suillus grevillei: Molecular evidence , Baura, G.;T.M. Szaro;T.D. Bruns , Mycologia / v.84,pp.592-597,
    26. Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA , Gardes, M.;T.J. White;J.A. Fortin;T.D. Bruns;J.W. Taylor , Can. J. Bot. / v.69,pp.180-190,
    27. Ribosomal DNA sequence divergence within internal transcribed spacer 1 of the Sclerotiniaceae , Carbone, I.;L.M. Kohn , Mycologia / v.85,pp.415-427,
    28. Phylogeny of Discomycetes and early radiations of the apothecial Ascomycotina inferred from SSU rDNA sequences data , Gargas, A.;J.W. Taylor , Exp. Mycol. / v.19,pp.7-15,
    29. Phylogenetic analysis of two ribosomal DNA regions indicates multiple dependent losses of sexual Talaromyces state among asexual Penicillium species in subgenus Biverticillium , LoBuglio, K.F.;J.I. Pitt;J.W. Taylor , Mycologia / v.85,pp.592-604,
    30. Phylogenetic relationships among Taphrina, Saitoella, and other higher fungi , Nishida, J.;J. Sugiyama , Mol. Biol. Evol. / v.10,pp.431-436,
    31. Swofford, D.L. , PAUP: Phylogenetic analysis using parsimony. Version 3.1.1. / v.,pp.,
    32. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics , White, T.J.;T. Bruns;S. Lee;J.W. Taylor;M.A. Innis(ed.);D.H. Gelfand(ed.);J.J. Sninsky(ed.);T.J. White(ed.) , PCR protocols: A guide to methods and applications / v.,pp.315-322,
    33. Higher taxa of Basidiomycetes: An 18S rRNA gene perspective , Swann, E.;J.W. Taylor , Mycologia / v.85,pp.923-936,
    34. Is Penicillium monophyletic? An evaluation of phylogeny in the family Trichocomaceae from 18S, 5.8S and ITS ribosomal DNA sequence data , Berbee, M.L.;A. Yoshimura;J.W. Taylor , Mycologia / v.87,pp.210-222,
    35. Comparison of the 5.8S rDNA and internal transcribed spacer sequences of isolates of Leptosphaeria maculans from different pathogenicity groups , Morales, V.M.;L.E. Pelcher;J.W. Taylor , Curr. Genet. / v.23,pp.490-495,
    36. Phylogenetic placement of Athelia bombacina, Aureobasidium puppulans, and Colletotrichum gloeosporioides inferred from sequence comparisons of small-subunit ribosomal RNAs , Illingworth, G.A.;J.H. Andrews;C. Bibeau;M.L. Sogin , Exp. Mycol. / v.15,pp.65-75,
    37. Rapid methods for nucleic acids extraction from petri dish-grown mycelia , Lecellier, G.;P. Silar , Curr. Genet. / v.25,pp.122-123,
    38. CLUSTAL V: Improved software for multiple sequence alignment , Higgins, D.G.;A.J. Bleasby;R. Fuchs , Cabios / v.8,pp.189-191,
    39. Sambrook, J.;E.F. Fritsch;T. Maniatis , Molecular cloning / v.1,pp.,
    40. Ryvarden, L.;R.L. Gilbertson , European polypores / v.1,pp.1-387,
    41. DNA sequencing with chain-terminating inhibitors , Sanger, F.;S. Nicklen;A.R. Coulson , Proc. Nat. Acad. Sci. USA / v.74,pp.5463,
    42. Signal, noise, and reliability in molecular phylogenetic analyses , Hillis, D.M.;C.J.P. Huelsenbeck , J. Heredity / v.83,pp.189-195,
    43. Rapid preparation of DNA from filamentous fungi , Raeder, U.;P. Broda , Lett. Appl. Microbiol. / v.1,pp.17-20,
    44. Substitution bias, weighting of DNA sequence evolution, and the phylogenetic position of fea's viper , Knight, A.;D.P. Mindell , Syst. Biol. / v.42,pp.18-31,
    45. Phylogenetic analysis of Trichaptum based on the RFLP of PCR-amplified DNAs , Ko, K.S.;H.S. Jung , J. Microbiol. / v.34,pp.295-299,
    46. rDNA sequence analysis confirms the distinction between Colletotrichum graminicola and C. sublineolum , Sherriff, C.;M.J. Whelan;G.M. Arnold;J.A. Bailey , Mycol. Res. / v.99,pp.475-478,
    47. Li, W.-H.;D. Graur , Fundamentals of molecular evolution / v.,pp.284,
    48. Phylogenetic relationships of selected cereal and grass rusts based on rDNA sequence analysis , Zambino, P.J.;L.J. Szabo , Mycologia / v.85,pp.401-414,

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