본문 바로가기
HOME> 논문 > 논문 검색상세

논문 상세정보

The journal of microbiology v.50 no.2, 2012년, pp.349 - 353   SCIE SCOPUS
본 등재정보는 저널의 등재정보를 참고하여 보여주는 베타서비스로 정확한 논문의 등재여부는 등재기관에 확인하시기 바랍니다.

Phycicoccus ochangensis sp. nov., Isolated from Soil of a Potato Cultivation Field

Kim, Hyang-Mi    (Microbiological Resource Center, KRIBB   ); Oh, Hyun-Woo    (Industrial Bio-materials Research Center, KRIBB   ); Park, Doo-Sang    (Microbiological Resource Center, KRIBB   ); Lee, Kang-Hyun    (Microbiological Resource Center, KRIBB   ); Kim, Sung-Uk    (Industrial Bio-materials Research Center, KRIBB   ); Park, Hee-Moon    (Department of Microbiology & Molecular Biology, Chungnam National University   ); Bae, Kyung-Sook    (Microbiological Resource Center, KRIBB  );
  • 초록

    Two novel, Gram-positive, motile, coccal bacteria, strains L1b- $b9^T$ and B5a-b5, were isolated from a potato cultivation field in Ochang, Korea. These isolates grew at $10-45^{\circ}C$ , pH 5.0-10.0, and in the presence of 8% (w/v) NaCl. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. The major menaquinone was MK-8( $H_4$ ) and the main cellular fatty acids were iso- $C_{14:0}$ , iso- $C_{15:0}$ , and anteiso- $C_{15:0}$ . Polar lipids in strain L1b- $b9^T$ consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, and an unknown glyco-amino lipid. The G+C content of genomic DNA was 73.6 mol%. A phylogenetic analysis based on 16S rRNA gene sequences showed that strains L1b- $b9^T$ and B5a-b5 shared 99.36% similarity and formed a robust clade with the type species of the genus Phycicoccus. Strain L1b- $b9^T$ is related most closely to Phycicoccus cremeus $V2M29^T$ (97.52% 16S rRNA gene sequence similarity). On the basis of phylogenetic characteristics, the name Phycicoccus ochangensis sp. nov. is proposed for strain LIb- $b9^T$ (=KCTC $19694^T$ =JCM <TEX JCM $17595^T$ ).


  • 주제어

    Phycicoccus ochangensis .   potato field .   Intrasporangiaceae.  

  • 참고문헌 (24)

    1. Chun, J., Lee, J.H., Jung, Y., Kim, M., Kim, S., Kim, B.K., and Lim, Y.W. 2007. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57, 2259-2261. 
    2. Collins, M.D. and Jones, D. 1981. Distribution of isoprenoid quinine structural types in bacteria and their taxonomic implications. Microbiol. Rev. 45, 316-354. 
    3. Dastager, S.G., Lee, J.C., Ju, Y.J., Park, D.J., and Kim, C.J. 2008. Phycicoccus bigeumensis sp. nov., a mesophilic actinobacterium isolated from Bigeum Island, Korea. Int. J. Syst. Evol. Microbiol. 58, 2425-2428. 
    4. Dunfield, K.E. and Germida, J.J. 2001. Diversity of bacterial communities in the rhizosphere and root interior of field-grown genetically modified Brassica napus. FEMS Microb. Ecol. 38, 1-9. 
    5. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid ybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224-229. 
    6. Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376. 
    7. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791. 
    8. Felsenstein, J. 2005. PHYLIP (Phylogeny Inference Package), version 3.6. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA. 
    9. Fitch, W.M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406-416. 
    10. Kim, B.C., Jeong, W.J., Kim, D.Y., Oh, H.W., Kim, H.M., Park, D.S., Park, H.M., and Bae, K.S. 2009. Paenibacillus pueri sp. nov., isolated from Puer tea. Int. J. Syst. Evol. Microbiol. 59, 1002-1006. 
    11. Komagata, K. and Suzuki, K. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19, 161-207. 
    12. Lee, S.D. 2006. Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete isolated from seaweed. Int. J. Syst. Evol. Microbiol. 56, 2369-2373. 
    13. Minnikin, D.E., O'Donnell, A.G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A., and Parlett, J.H. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2, 233-241. 
    14. Saitou, N. and Nei, M. 1987. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425. 
    15. Sambrook, J. and Russell, D.W. 2001. Molecular Cloning: a Laboratory Manual, 3rd (edn.). Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, N.Y., USA. 
    16. Sasser, M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. MIDI Inc., Newark, DE, USA. 
    17. Shin, Y.K., Lee, J.S., Chun, C.O., Kim, H.J., and Park, Y.H. 1996. Isoprenoid quinone profiles of the Leclercia adecarboxylata KCTC 1036T. J. Microbiol. Biotechnol. 6, 68-69. 
    18. Smibert, R.M. and Krieg, N.R. 1994. Phenotypic characterization. Methods for General and Molecular Bacteriology, pp. 607-654. In Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds.). American Society for Microbiology, Washington, D.C., USA. 
    19. Tamaoka, J. and Komagata, K. 1984. Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol. Lett. 25, 125-128. 
    20. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876-4882. 
    21. Wang, L., An, D.S., Yi, T.H., Lee, S.T., and Im, W.T. 2011. Phycicoccus ginsenosidimutans sp. nov., isolated from soil of a ginseng field. Int. J. Syst. Evol. Microbiol. 61, 524-528. 
    22. Weon, H.Y., Yoo, S.H., Kim, B.Y., Schumann, P., Kroppenstedt, R.M., Hong, S.K., and Kwon, S.W. 2008. Phycicoccus aerophilus sp. nov., isolated from air. Int. J. Syst. Evol. Microbiol. 58, 2389- 2392. 
    23. Yoon, J.H., Lee, S.Y., Kang, S.J. and Oh, T.K. 2008. Phycicoccus dokdonensis sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 58, 597-600. 
    24. Zhang, J.A., Liu, X.Y., and Liu, S.J. 2011. Phycicoccus cremeus sp. nov., isolated from forest soil, and emended description of the genus Phycicoccus. Int. J. Syst. Evol. Microbiol. 61, 71-75. 

 활용도 분석

  • 상세보기

    amChart 영역
  • 원문보기

    amChart 영역

원문보기

무료다운로드
  • 원문이 없습니다.
유료다운로드

유료 다운로드의 경우 해당 사이트의 정책에 따라 신규 회원가입, 로그인, 유료 구매 등이 필요할 수 있습니다. 해당 사이트에서 발생하는 귀하의 모든 정보활동은 NDSL의 서비스 정책과 무관합니다.

원문복사신청을 하시면, 일부 해외 인쇄학술지의 경우 외국학술지지원센터(FRIC)에서
무료 원문복사 서비스를 제공합니다.

NDSL에서는 해당 원문을 복사서비스하고 있습니다. 위의 원문복사신청 또는 장바구니 담기를 통하여 원문복사서비스 이용이 가능합니다.

이 논문과 함께 출판된 논문 + 더보기